Bioconductor Topics

Write, containerize, publish and version Quarto books with Bioconductor

Tools to aid the development of Bioconductor Workflow packages

Quality metrics for ChIPseq data

Analysis of single-cell epigenomics datasets with a Shiny App

Report of DEG analysis

Differential Binding Analysis of ChIP-Seq Peak Data

Dynamic document tools

Seamless navigation through combined results of set-based and network-based enrichment analysis

Reproducible GSEA Benchmarking

Defining and visualizing the distances between different genesets

Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

Interactive visualizations for gene expression analysis

Evaluation and correction of batch effects in microbiome data-sets

A package for importing and analyzing data from Roche's Genome Sequencer System

Condition specific detection from expression data

Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Annotation tools for Affymetrix biological metadata

Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.

Quality metrics report for microarray data sets

Automate package and project setup for Bioconductor packages

Compare Characteristic Features of Count Data Sets

Helps creating report for improving Reproducible Computational Research

Interactive Differential Expression AnaLysis

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms

MOSt frequently used and useful Differential Expression Functions

Load FastqQC reports and other NGS related files

Interactive Visualization of RNA-seq Data Using a Principal Components Approach

A Framework for Quality Control

Re-using Content in Bioconductor Books

Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results

Collection and implementation of public transcriptional cancer signatures

systemPipeR: A Multipurpose Workflow Management System for Reproducible Data Analysis

systemPipeShiny: An Interactive Framework for Workflow Management and Visualization

Tools for data visualization

Build IGV tracks and HTML reports

Transcript Quantification Import with Automatic Metadata

Export plotting files to the xmapBridge for visualisation in X:Map