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ChromSCape

Bioc current

Analysis of single-cell epigenomics datasets with a Shiny App

v1.22.0 · software · GPL-3
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Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

ChromSCape - Chromatin landscape profiling for Single Cells - is a ready-to-launch user-friendly Shiny Application for the analysis of single-cell epigenomics datasets (scChIP-seq, scATAC-seq, scCUT&Tag, ...) from aligned data to differential analysis & gene set enrichment analysis. It is highly interactive, enables users to save their analysis and covers a wide range of analytical steps: QC, preprocessing, filtering, batch correction, dimensionality reduction, vizualisation, clustering, differential analysis and gene set analysis.

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Topics

Software › ShinyApps
Software
Software › Technology › SingleCell
Software › Technology › Sequencing › ChIPSeq
Software › Technology › Sequencing › ATACSeq
Software › Technology › Sequencing › MethylSeq
Software › StatisticalMethod › Classification
Software › StatisticalMethod › Clustering
Software › ResearchField › Epigenetics
Software › StatisticalMethod › PrincipalComponent
Software › Technology › SingleCell
Software › Technology › Sequencing › ATACSeq
Software › Technology › Sequencing › ChIPSeq
Software › WorkflowStep › Annotation
Software › WorkflowStep › BatchEffect
Software › WorkflowStep › MultipleComparison
Software › WorkflowStep › Normalization
Software › WorkflowStep › Pathways
Software › WorkflowStep › Preprocessing
Software › WorkflowStep › QualityControl
Software › WorkflowStep › ReportWriting
Software › WorkflowStep › Visualization
Software › BiologicalQuestion › GeneSetEnrichment
Software › BiologicalQuestion › DifferentialPeakCalling

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