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SingleCellExperiment

Bioc current

S4 Classes for Single Cell Data

v1.34.0 · software · GPL-3
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Release Lineage

Entered 3.6 · Oct 31, 2017

Current · Requires R 4.6

1.0 In 18 of 49 releases 3.23

Description

Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.

Code & tests

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Code

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › Infrastructure › DataRepresentation
Software › Infrastructure › DataImport
Software › Infrastructure
Software › Technology › SingleCell

Depended on by (370)

Bioconductor (347)

ADImpute aggregateBioVar airpart alabaster.sce alabaster.sfe anansi ANCOMBC anglemania anndataR APL ASURAT atacInferCnv Banksy BASiCS BASiCStan BatChef batchelor BayesSpace bayNorm blase BUSseq CARDspa CATALYST CatsCradle ccfindR ccImpute CDI celda CellBench CelliD +317 more

CRAN (23)

DIscBIO imcExperiment karyotapR mikropml mixhvg nebula scROSHI Canek CytoSimplex RaceID SVG Seurat SuperCell clustree dyngen futurize gedi2 harmony lstar radEmu rliger singleCellHaystack tidydr

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