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celda

Bioc current

CEllular Latent Dirichlet Allocation

v1.28.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.9 · May 3, 2019

Current · Requires R 4.6

1.0 In 15 of 49 releases 3.23

Description

Celda is a suite of Bayesian hierarchical models for clustering single-cell RNA-sequencing (scRNA-seq) data. It is able to perform "bi-clustering" and simultaneously cluster genes into gene modules and cells into cell subpopulations. It also contains DecontX, a novel Bayesian method to computationally estimate and remove RNA contamination in individual cells without empty droplet information. A variety of scRNA-seq data visualization functions is also included.

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Topics

Software › Technology › SingleCell
Software › AssayDomain › GeneExpression
Software › StatisticalMethod › Clustering
Software › Technology › Sequencing
Software › StatisticalMethod › Bayesian
Software › ResearchField › Immunology › ImmunoOncology
Software › Infrastructure › DataImport

Depended on by (2)

Bioconductor (2)

decontX singleCellTK

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