Skip to content

scater

Bioc current

Single-Cell Analysis Toolkit for Gene Expression Data in R

v1.40.1 · software · GPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › Technology › SingleCell
Software › Technology › Sequencing › RNASeq
Software › WorkflowStep › QualityControl
Software › WorkflowStep › Preprocessing
Software › WorkflowStep › Normalization
Software › WorkflowStep › Visualization
Software › StatisticalMethod › DimensionReduction
Software › ResearchField › Transcriptomics
Software › AssayDomain › GeneExpression
Software › Technology › Sequencing
Software
Software › Infrastructure › DataImport
Software › Infrastructure › DataRepresentation
Software › Infrastructure
Software › BiologicalQuestion › Coverage

Depended on by (179)

Bioconductor (171)

airpart alabaster.sfe anglemania APL Banksy BatChef batchelor BayesSpace blase bluster CATALYST ccImpute celda CelliD CellMentor CellMixS CellTrails Cepo chevreulPlot chevreulProcess ChromSCape CiteFuse clustSIGNAL concordexR Coralysis corral crumblr dandelionR decontX DeeDeeExperiment +141 more

CRAN (8)

CAESAR.Suite PRECAST Canek ProFAST SuperCell coFAST futurize scellpam

People