pheatmap

1.0.13

Pretty Heatmaps

93packages depend

1.1Mdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Raivo KoldeFirst published 2010-10-2418 releasesCRAN page ↗

Implementation of heatmaps that offers more control over dimensions and appearance.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("pheatmap", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pheatmap

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-pheatmap

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-pheatmap

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.2 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-06-08
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 90%
Return-value docs: 100%
References docs: 0%

Downloads

1.1M

CRAN downloads in the past year

Rank #351 · ~2.9K/day · ~88.7K/mo

Releases R versions

Daily download trend is not available in this view yet.

91.3K30 days

296.1K90 days

1.1M1 year

Compare downloads with other packages →

Also on6.6K r2u14 autocran135K conda_forge28.9K bioconda75 c2d4u

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.0

Imports (7)

gridRColorBrewer scales gtablestatsgrDevicesgraphics

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

93direct

3indirect

and 45 more packages.

Code & Tests

People & History

People (1)

Maintainer (1)

Raivo Kolde

Author, Maintainer

Authors (1)

Raivo Kolde

Author, Maintainer

Package Timeline

18 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.13Latest
2025-06-05 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.0.12
2019-01-04 · diff ↗
1.0.10
2018-05-20 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.0.8
2015-12-11 · diff ↗
1.0.7
2015-07-02 · diff ↗

Show 20 earlier events

R
R 3.2.0 released · 2015-04-16
1.0.2
2015-03-10 · diff ↗
R
R 3.1.0 released · 2014-04-10
0.7.7
2013-09-19 · diff ↗
R
R 3.0.0 released · 2013-04-03
0.7.4
2012-11-22 · diff ↗
0.7.3
2012-09-14 · diff ↗
0.7.2
2012-09-03 · diff ↗
0.7.1
2012-08-29 · diff ↗
0.7
2012-08-13 · diff ↗
R
R 2.15.0 released · 2012-03-30
0.6.1
2012-03-08 · diff ↗
0.6.0
2012-02-18 · diff ↗
R
R 2.14.0 released · 2011-10-31
0.5.1
2011-07-04 · diff ↗
0.5
2011-06-15 · diff ↗
R
R 2.13.0 released · 2011-04-13
0.3
2010-11-04 · diff ↗
0.2
2010-10-24
R
R 2.12.0 released · 2010-10-15

Package metadata

First published: 2010-10-24
Total releases: 18 / 16 yrs
License: GPL-2 OSI
Minimum R: ≥ 2.0
Download size: 15 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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