RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Description
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (15 non-OK)
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installed package size
installed size is 10.7Mb
sub-directories of 1Mb or more:
data 2.0Mb
doc 6.6Mb
libs 1.3Mb
package dependencies
Packages suggested but not available for checking: 'batchelor', 'slingshot'
installed package size
installed size is 10.6Mb
sub-directories of 1Mb or more:
data 2.0Mb
doc 6.6Mb
libs 1.2Mb
installed package size
installed size is 10.4Mb
sub-directories of 1Mb or more:
data 2.0Mb
doc 6.6Mb
libs 1.0Mb
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Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
package dependencies
Packages suggested but not available for checking: 'batchelor', 'slingshot'
installed package size
installed size is 10.6Mb
sub-directories of 1Mb or more:
data 2.0Mb
doc 6.6Mb
libs 1.2Mb
installed package size
installed size is 10.4Mb
sub-directories of 1Mb or more:
data 2.0Mb
doc 6.6Mb
libs 1.0Mb