cophescan
Adaptation of the Coloc Method for PheWAS
v1.4.2
·
Jul 30, 2025
·
GPL-3
Description
A Bayesian method for Phenome-wide association studies (PheWAS) that identifies causal associations between genetic variants and traits, while simultaneously addressing confounding due to linkage disequilibrium. For details see Manipur et al (2024, Nature Communications) <doi:10.1038/s41467-024-49990-8>.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
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r-devel-linux-x86_64-debian-gcc
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r-devel-linux-x86_64-fedora-clang
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r-devel-linux-x86_64-fedora-gcc
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r-devel-macos-arm64
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installed package size
installed size is 6.2Mb
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r-oldrel-macos-x86_64
installed package size
installed size is 6.2Mb
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r-oldrel-windows-x86_64
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
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r-patched-linux-x86_64
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r-release-linux-x86_64
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NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 3.5Mb
libs 2.1Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 3.5Mb
libs 2.2Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 5.2Mb
sub-directories of 1Mb or more:
data 3.5Mb
libs 1.2Mb
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Version History
new
1.4.2
Mar 9, 2026