ADAPTS

Automated Deconvolution Augmentation of Profiles for Tissue Specific Cells

v1.0.22 · Sep 13, 2022 · MIT + file LICENSE

Description

Tools to construct (or add to) cell-type signature matrices using flow sorted or single cell samples and deconvolve bulk gene expression data. Useful for assessing the quality of single cell RNAseq experiments, estimating the accuracy of signature matrices, and determining cell-type spillover. Please cite: Danziger SA et al. (2019) ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific cells <doi:10.1371/journal.pone.0224693>.

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14 NOTE

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	73.9s
r-devel-linux-x86_64-debian-gcc	NOTE	47.4s
r-devel-linux-x86_64-fedora-clang	NOTE	117.1s
r-devel-linux-x86_64-fedora-gcc	NOTE	130.4s
r-devel-macos-arm64	NOTE	23s
r-devel-windows-x86_64	NOTE	101s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	62s
r-oldrel-windows-x86_64	NOTE	127s
r-patched-linux-x86_64	NOTE	69.3s
r-release-linux-x86_64	NOTE	69.3s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	84s
r-release-windows-x86_64	NOTE	97s

Check details (19 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Samuel A Danziger <sam.danziger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "A"),
                    family = "Danziger",
                    role = c("aut", "cre"),
                    email = "sam.danziger@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Samuel A Danziger <sam.danziger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "A"),
                    family = "Danziger",
                    role = c("aut", "cre"),
                    email = "sam.danziger@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-oldrel-macos-arm64

installed package size

  installed size is  7.5Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  7.6Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  7.5Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Samuel A Danziger <sam.danziger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "A"),
                    family = "Danziger",
                    role = c("aut", "cre"),
                    email = "sam.danziger@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Samuel A Danziger <sam.danziger@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Samuel", "A"),
                    family = "Danziger",
                    role = c("aut", "cre"),
                    email = "sam.danziger@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) SVMDECON.Rd:23: Lost braces; missing escapes or markup?
    23 | and the best result from three values of v = {0.25, 0.5, 0.75}
       |                                              ^

NOTE r-oldrel-macos-arm64

installed package size

  installed size is  7.5Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb

NOTE r-oldrel-macos-x86_64

installed package size

  installed size is  7.6Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb

NOTE r-oldrel-windows-x86_64

installed package size

  installed size is  7.5Mb
  sub-directories of 1Mb or more:
    doc   7.1Mb

Reverse Dependencies (1)

imports

scMappR

Dependency Network

Version History

new 1.0.22 Mar 9, 2026

Maintainer

Samuel A Danziger

Dependencies

Depends

R (>= 3.3.0)

Imports

missForest e1071 ComICS pheatmap doParallel utils quantmod preprocessCore pcaMethods foreach nnls ranger

Suggests

R.rsp DeconRNASeq WGCNA

Compilation

No compilation needed

First Published

Mar 9, 2026

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