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OncoSubtype

Predict Cancer Subtypes Based on TCGA Data using Machine Learning Method

v1.0.0 · Mar 22, 2024 · GPL-3

Description

Provide functionality for cancer subtyping using nearest centroids or machine learning methods based on TCGA data.

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CRAN Check Status

1 ERROR
1 NOTE
12 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang ERROR
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (15 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.
ERROR r-devel-linux-x86_64-debian-clang

package dependencies

Package required but not available: ‘SummarizedExperiment’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.
OK r-devel-linux-x86_64-fedora-clang

*


            
OK r-devel-linux-x86_64-fedora-gcc

*


            
OK r-devel-macos-arm64

*


            
OK r-devel-windows-x86_64

*


            
OK r-oldrel-macos-arm64

*


            
OK r-oldrel-macos-x86_64

*


            
OK r-oldrel-windows-x86_64

*


            
OK r-patched-linux-x86_64

*


            
OK r-release-linux-x86_64

*


            
OK r-release-macos-arm64

*


            
OK r-release-macos-x86_64

*


            
OK r-release-windows-x86_64

*


            

Check History

ERROR 12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

Dependency Network

Dependencies Reverse dependencies SummarizedExperiment caret randomForest e1071 pheatmap tibble dplyr limma rlang Rdpack OncoSubtype

Version History

new 1.0.0 Mar 9, 2026