cinaR

A Computational Pipeline for Bulk 'ATAC-Seq' Profiles

v0.2.6 · Feb 4, 2026 · GPL-3

Description

Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combines different packages to have an ultimate package for both data analyses and visualization of 'ATAC-seq' data. Methods are described in 'Karakaslar et al.' (2021) <doi:10.1101/2021.03.05.434143>.

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CRAN Check Status

1 ERROR

2 NOTE

11 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	ERROR	4.3s
r-devel-linux-x86_64-debian-gcc	OK	99.9s
r-devel-linux-x86_64-fedora-clang	OK	137s
r-devel-linux-x86_64-fedora-gcc	OK	145.1s
r-devel-macos-arm64	OK	40s
r-devel-windows-x86_64	OK	148s
r-oldrel-macos-arm64	NOTE	39s
r-oldrel-macos-x86_64	NOTE	156s
r-oldrel-windows-x86_64	OK	197s
r-patched-linux-x86_64	OK	73.5s
r-release-linux-x86_64	OK	131s
r-release-macos-arm64	OK	33s
r-release-macos-x86_64	OK	91s
r-release-windows-x86_64	OK	147s

Check details (14 non-OK)

ERROR r-devel-linux-x86_64-debian-clang

package dependencies

Packages required but not available: 'DESeq2', 'sva'

Packages suggested but not available for checking:
  'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene',
  'TxDb.Hsapiens.UCSC.hg19.knownGene',
  'TxDb.Mmusculus.UCSC.mm10.knownGene'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

OK r-devel-linux-x86_64-debian-gcc

OK r-devel-linux-x86_64-fedora-clang

OK r-devel-linux-x86_64-fedora-gcc

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking:
  'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene',
  'TxDb.Mmusculus.UCSC.mm10.knownGene'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking:
  'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene',
  'TxDb.Hsapiens.UCSC.hg19.knownGene',
  'TxDb.Mmusculus.UCSC.mm10.knownGene'

OK r-oldrel-windows-x86_64

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

OK r-release-macos-arm64

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026

ERROR r-devel-linux-x86_64-debian-clang

package dependencies

Packages required but not available: 'DESeq2', 'sva'

Packages suggested but not available for checking:
  'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene',
  'TxDb.Hsapiens.UCSC.hg19.knownGene',
  'TxDb.Mmusculus.UCSC.mm10.knownGene'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking:
  'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene',
  'TxDb.Mmusculus.UCSC.mm10.knownGene'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking:
  'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene',
  'TxDb.Hsapiens.UCSC.hg19.knownGene',
  'TxDb.Mmusculus.UCSC.mm10.knownGene'

Dependency Network

Version History

new 0.2.6 Mar 10, 2026