SpaCCI
Spatially Aware Cell-Cell Interaction Analysis
Description
Provides tools for analyzing spatial cell-cell interactions based on ligand-receptor pairs, including functions for local, regional, and global analysis using spatial transcriptomics data. Integrates with databases like 'CellChat' <https://github.com/jinworks/CellChat>, 'CellPhoneDB' <https://www.cellphonedb.org/>, 'Cellinker' <https://www.rna-society.org/cellinker/>, 'ICELLNET' <https://github.com/soumelis-lab/ICELLNET>, and 'ConnectomeDB' <https://humanconnectome.org/software/connectomedb/> to identify ligand-receptor pairs, visualize interactions through heatmaps, chord diagrams, and infer interactions on different spatial scales.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
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installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
extdata 5.9Mb
libs 1.9Mb
installed package size
installed size is 8.4Mb
sub-directories of 1Mb or more:
extdata 5.9Mb
libs 2.0Mb
installed package size
installed size is 7.3Mb
sub-directories of 1Mb or more:
extdata 6.0Mb
libs 1.0Mb
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Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
installed package size
installed size is 8.3Mb
sub-directories of 1Mb or more:
extdata 5.9Mb
libs 1.9Mb
installed package size
installed size is 8.4Mb
sub-directories of 1Mb or more:
extdata 5.9Mb
libs 2.0Mb
installed package size
installed size is 7.3Mb
sub-directories of 1Mb or more:
extdata 6.0Mb
libs 1.0Mb