Bioconductor Packages

Software infrastructure for efficient representation of full genomes and their SNPs

Forge your own BSgenome data package

R SDK for BaseSpace RESTful API

Illustration of FHIR ingestion and transformation using R

Efficient manipulation of biological strings

Bumpy Matrix of Non-Scalar Objects

Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Package for CTDbase data query, visualization and downstream analysis

Reconstruction, visualization and analysis of branching trajectories

Tools for counting and visualising mutations in a target location

A GatingML Interface for Cross Platform Cytometry Data Sharing

A `DataFrame` (`S4Vectors`) backend for `dplyr`

DeeDeeExperiment: An S4 Class for managing and exploring omics analysis results

A unified framework for working transparently with on-disk and in-memory array-like datasets

Delayed operation on DataFrame using standard DataFrame metaphor

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Delayed Arrays of Random Values

R package for sparse and out-of-core arithmetic and decomposition of Tensor

Manages subsets of data with Bioconductor Experiment objects

A Bioconductor package for accessing GA4GH API data servers

Representing GDS files as array-like objects

Visualise microarray and RNAseq data using gene ontology annotations

Genomic Visualizations in R

Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

Enhanced string parsing for genomic coordinates

GenomicDistributions: fast analysis of genomic intervals with Bioconductor

Representation and manipulation of genomic intervals

Representation and Manipulation of Genomic Tuples

Population-level Representation on scRNA-Seq data

S4 Class for Quantitative Data and Associated Networks

HDF5 datasets as array-like objects in R

Set of 3D genomic interaction analysis tools

ILoReg: a tool for high-resolution cell population identification from scRNA-Seq data

Foundation of integer range manipulation in Bioconductor

Base Classes for Storing Genomic Interaction Data

Visualize all edges within a KEGG pathway and overlay LINCS data

LoomExperiment container

Fast treatment of MACSQuantify FACS data

Working with modified nucleotide sequences

Prioritising a molecule-level storage of Spatial Transcriptomics Data

Software for the integration of multi-omics experiments in Bioconductor

Multiomic Batch effect Correction

Implementation of MultiDataSet and ResultSet

Integrative Bulk and Single-Cell Experiment Container

An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples

OSAT: Optimal Sample Assignment Tool

OSTA book data

Search harmonized metadata created under the OmicsMLRepo project

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

OmniPath web service client and more