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InteractionSet

Bioc current

Base Classes for Storing Genomic Interaction Data

v1.40.0 · software · GPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.

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Topics

Software › Infrastructure
Software › Infrastructure › DataRepresentation
Software
Software › Technology › Sequencing › HiC

Depended on by (40)

Bioconductor (37)

annoLinker CAGEfightR ChIPpeakAnno DegCre diffHic DMRcaller DuplexDiscovereR EDIRquery extraChIPs GenomicCoordinates GenomicInteractions geomeTriD HicAggR HiCaptuRe HiCcompare HiCDCPlus HiCDOC HiCExperiment HiContacts HiCool HiCParser hicVennDiagram mariner nullranges plotgardener plyinteractions sevenC trackViewer transmogR updateObject +7 more

CRAN (3)

hicream treediff CNVScope

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