Skip to content

annoLinker

Bioc current

Annotating genomic regions through chromatin interaction links

v1.0.0 · software · GPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.23 · Apr 29, 2026

Current · Requires R 4.6

1.0 In 1 of 49 releases 3.23

Description

Fast annotation of genomic peaks using DNA interaction data by constructing interaction networks with igraph, where peaks overlapping any node in a connected subgraph are annotated with all genes in that subgraph. The annotation evidence could be visualized as either a network graph or a genomic track integrated with gene annotation information.

Code

Structure

Lines of code

1,598

Files

25

Compiled share

0%

Has compiled src

No

Language breakdown

R 959 (60%)Tests 254 (15.9%)Docs 252 (15.8%)Vignettes 133 (8.3%)

API

Exported functions

10

Internal functions

20

Recent export changes

v3.23+10 annoLinker, anno_clusters, anno_event +7 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.26

testthat edition

–

CI present

Yes

CI type

["github-actions"]

PR gated

Yes

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

Yes

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

–

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.5.0

System requirements

–

C++ standard

–

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

1

First release

2026-04-28

Latest release

2026-04-28

Avg cadence

–

Cold removal rate

–

Dep drift

0

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Topics

Software › WorkflowStep › Visualization › Network
Software › WorkflowStep › Annotation
Software › WorkflowStep › Visualization

People