rtracklayer
Bioc currentR interface to genome annotation files and the UCSC genome browser
v1.72.0
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software
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Artistic-2.0 + file LICENSE
Release Lineage
Entered 2.2 · May 1, 2008
Current · Requires R 4.6
1.0
In 37 of 49 releases
3.23
Description
Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.
Code
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Topics
Depended on by (359)
Bioconductor (345)
alabaster.files annoLinker AnnotationHub AnnotationHubData annotatr APAlyzer ATACseqQC ATACseqTFEA autonomics ballgown bedbaser BgeeCall BindingSiteFinder BiocFileCache biovizBase biscuiteer BiSeq branchpointer BREW3R.r BSgenome BSgenomeForge bsseq CAGEfightR CAGEr casper CexoR ChIPanalyser ChIPComp chipenrich ChIPpeakAnno +315 more
People
Michael Lawrence