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Characterization of Alternative Splicing Based on Paired-End Reads

v2.46.0 · software · GPL (>=2)
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Release Lineage

Entered 2.12 · Apr 4, 2013

Current · Requires R 4.6

1.0 In 27 of 49 releases 3.23

Description

Infer alternative splicing from paired-end RNA-seq data. The model is based on counting paths across exons, rather than pairwise exon connections, and estimates the fragment size and start distributions non-parametrically, which improves estimation precision.

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › DifferentialExpression
Software › AssayDomain › Transcription
Software › Technology › Sequencing › RNASeq
Software › Technology › Sequencing

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