Bioconductor Packages

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

ADAM: Activity and Diversity Analysis Module

Adaptive Dropout Imputer (ADImpute)

Analysis of Big Data from aCGH Experiments using Parallel Computing and ff Objects

Agreement of Differential Expression Analysis

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

A toolkit for APA analysis using RNA-seq data

Association Plots

Adaptive Robust Regression normalization for Illumina methylation data

Ancestry Specific Allele Frequency Estimation

An R package for subset-based association analysis of heterogeneous traits and subtypes

Adaptive Signature Selection and InteGratioN (ASSIGN)

Functional annotation-driven unsupervised clustering for single-cell data

Analysis of Alternative Splicing Using RNA-Seq

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

A Functional Approach To Impute Genetically Regulated Expression

Analyze and correct probe positional bias in microarray data due to RNA degradation

Accessing AlphaMissense Data Resources in R

Statistical analysis of sequins

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

BBCAnalyzer: an R/Bioconductor package for visualizing base counts

BEAT - BS-Seq Epimutation Analysis Toolkit

Correction of batch effects in DNA methylation data

Performs Bayesian GWAS analysis for non-Gaussian data using BG2

Refitting diploid region profiles using a clustering procedure

Model higher-order methylation profiles

Software infrastructure for efficient representation of full genomes and their SNPs

Computational pipeline for computing probability of modification from structure probing experiment data

Batch Effects Correction with Unknown Subtypes

Batch Effect Correction with Unknow Subtypes for scRNA-seq data

Spatial transcriptomic clustering

Batch Effects Quality Control Software

BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Automatic RNA-Seq present/absent gene expression calls generation

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Bias-free Footprint Enrichment Test

Processing and analyzing bisulfite sequencing data

Biclustering Analysis and Results Exploration

Binding site defintion based on iCLIP data

Functional Similarities

Biological Network Reconstruction Omnibus

Routines for the functional analysis of biological networks

BioTIP: An R package for characterization of Biological Tipping-Point

Representing Different Biological Sets

This R package for performing module repertoire analyses and generating fingerprint representations