Bioconductor Packages

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

Algorithms for Calculating Microarray Enrichment (ACME)

ADAM: Activity and Diversity Analysis Module

Activity and Diversity Analysis Module Graphical User Interface

Analysis of Microbiome Differential Abundance by Pooling Tobit Models

Adaptive Dropout Imputer (ADImpute)

Analysis of Big Data from aCGH Experiments using Parallel Computing and ff Objects

Agreement of Differential Expression Analysis

CytoBands for AnnotationHub

EnsDbs for AnnotationHub

LRBaseDbs for AnnotationHub

MassBank Annotation Resources for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

SQLites, tibbles, and data.tables for AnnotationHub

Metabolites linked to WikiPathways pathways (for AnnotationHub)

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

A data package

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

Microbiome differential abudance and correlation analyses with bias correction

Affinity Network Fusion for Complex Patient Clustering

A toolkit for APA analysis using RNA-seq data

Association Plots

Example dataset for normalization of Illumina 450k Methylation data

Adaptive Robust Regression normalization for Illumina methylation data

Ancestry Specific Allele Frequency Estimation

Predict Acetylated Lysine Sites

Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models

Automatic Statistical Identification in Complex Spectra

Example of 1D NMR spectra data for ASICS package

An R package for subset-based association analysis of heterogeneous traits and subtypes

Adaptive Signature Selection and InteGratioN (ASSIGN)

Functional annotation-driven unsupervised clustering for single-cell data

Analysis of Alternative Splicing Using RNA-Seq

ATAC-seq Quality Control

Transcription Factor Enrichment Analysis for ATAC-seq

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Attribute-Weighted Aggregation

Attribute-Weighted Aggregation Data

An R package for fast computing for adaptively weighted fisher's method

visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics

A Functional Approach To Impute Genetically Regulated Expression

Analyze and correct probe positional bias in microarray data due to RNA degradation

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package