Bioconductor Packages

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Processing and Differential Expression Analysis of Agilent microRNA chips

Investigates Allele Specific Expression

Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

AlphaMissense v2023 Pathogenicity Scores AnnotationHub Resource Metadata for hg19

AlphaMissense v2023 Pathogenicity Scores AnnotationHub Resource Metadata for hg38

Accessing AlphaMissense Data Resources in R

Automated spectraL Processing System for NMR

Example of Amplified Data

Bioconductor on the AnVIL compute environment

R / Bioconductor Support for the AnVIL Azure Platform

Generic functions for interacting with the AnVIL ecosystem

Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).

The GCP R Client for the AnVIL

Publish Packages and Other Resources to AnVIL Workspaces

Run workflows implemented in Terra/AnVIL workspace

Statistical analysis of sequins

Manipulation of SQLite-based annotations in Bioconductor

Facilities for Filtering Bioconductor Annotation Resources

Tools for building SQLite-based annotation data packages

Client to access AnnotationHub resources

Transform public data resources into Bioconductor Data Structures

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Data and Files for the AssessORF Package

Bayesian Analysis of Differential Expression in RNA Sequencing Data

A Bayesian Approach for Geneset Selection

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

BBCAnalyzer: an R/Bioconductor package for visualizing base counts

Predicting binding site consensus from ranked DNA sequences

BEAT - BS-Seq Epimutation Analysis Toolkit

High Performance Data Integration for Large-Scale Analyses of Incomplete Omic Profiles Using Batch-Effect Reduction Trees (BERT)

Correction of batch effects in DNA methylation data

Performs Bayesian GWAS analysis for non-Gaussian data using BG2

BLMA: A package for bi-level meta-analysis

Refitting diploid region profiles using a clustering procedure

A babysitter's package for reproducible RNA-seq analysis

Model higher-order methylation profiles

Baffling Recursive Algorithm for Isotope distributioN calculations

R package associated to BREW3R

Software infrastructure for efficient representation of full genomes and their SNPs

Arabidopsis lyrata full genome (JGI version V1.0)

Full genome sequences for Apis mellifera (BeeBase assembly4)

Full genome sequences for Apis mellifera (Amel_HAv3.1)

Full genome sequences for Apis mellifera (UCSC version apiMel2)