AlpsNMR
Bioc currentAutomated spectraL Processing System for NMR
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
Reads Bruker NMR data directories both zipped and unzipped. It provides automated and efficient signal processing for untargeted NMR metabolomics. It is able to interpolate the samples, detect outliers, exclude regions, normalize, detect peaks, align the spectra, integrate peaks, manage metadata and visualize the spectra. After spectra proccessing, it can apply multivariate analysis on extracted data. Efficient plotting with 1-D data is also available. Basic reading of 1D ACD/Labs exported JDX samples is also available.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
214 106 exported
Complexity
3.4 avg / 26 max
Call network
214 nodes / 248 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
19,309
Files
213
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
111
Internal functions
95
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.06
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Return-value doc rate
98.9%
\dontrun example ratio
3.9%
Roxygen coverage
99.1%
Has pkgdown
Yes
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
76.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2021-03-31
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
100%
Dep drift
16
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Topics
People
- Sergio Oller Moreno author maintainer
- Institute for Bioengineering of Catalonia cph
- Nestlé Institute of Health Sciences cph
- Luis Fernandez author
- Héctor Gracia Cabrera author
- Miller Jack contributor
- Laura López Sánchez contributor
- Francisco Madrid Gambin author
- Santiago Marco Colás author
- Ivan Montoliu Roura author