BOBaFIT
Bioc currentRefitting diploid region profiles using a clustering procedure
Release Lineage
Entered 3.15 · Apr 27, 2022
Current · Requires R 4.6
Description
This package provides a method to refit and correct the diploid region in copy number profiles. It uses a clustering algorithm to identify pathology-specific normal (diploid) chromosomes and then use their copy number signal to refit the whole profile. The package is composed by three functions: DRrefit (the main function), ComputeNormalChromosome and PlotCluster.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
5 5 exported
Complexity
8.2 avg / 20 max
Call network
5 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,444
Files
30
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
6
Internal functions
0
Testing & CI
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
3
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
83.3%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
GPL (>= 3)
License flags
SPDX valid, OSI approved
History
Versions
9
First release
2022-07-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Gaia Mazzocchetti author maintainer
- Andrea Poletti author
- Vincenza Solli author