Skip to content

GenomicFeatures

Bioc current

Query the gene models of a given organism/assembly

v1.64.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.5 · Oct 28, 2009

Current · Requires R 4.6

1.0 In 34 of 49 releases 3.23

Description

Extract the genomic locations of genes, transcripts, exons, introns, and CDS, for the gene models stored in a TxDb object. A TxDb object is a small database that contains the gene models of a given organism/assembly. Bioconductor provides a small collection of TxDb objects in the form of ready-to-install TxDb packages for the most commonly studied organisms. Additionally, the user can easily make a TxDb object (or package) for the organism/assembly of their choice by using the tools from the txdbmaker package.

Code & tests

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › Genetics
Software › Infrastructure
Software › WorkflowStep › Annotation
Software › Technology › Sequencing
Software › BiologicalQuestion › GenomeAnnotation

Depended on by (326)

Bioconductor (321)

AllelicImbalance AnnotationHubData annotatr APAlyzer appreci8R ASpli atena bambu BANDITS BgeeCall BindingSiteFinder Bioc.gff biomvRCNS Biostrings biovizBase BSgenomeForge bumphunter BUSpaRse CAGEfightR CAGEr carnation casper chevreulProcess ChIPpeakAnno ChIPQC ChIPseeker chipseq chromPlot Cogito compEpiTools +291 more

CRAN (5)

driveR lisat oncoPredict CNVScope polyRAD

People