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bambu

Bioc current

Context-Aware Transcript Quantification from Long Read RNA-Seq data

v3.14.0 · software · GPL-3 + file LICENSE
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Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

bambu is a R package for multi-sample transcript discovery and quantification using long read RNA-Seq data. You can use bambu after read alignment to obtain expression estimates for known and novel transcripts and genes. The output from bambu can directly be used for visualisation and downstream analysis such as differential gene expression or transcript usage.

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Code

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Topics

Software › WorkflowStep › Alignment
Software › BiologicalQuestion › Coverage
Software › BiologicalQuestion › DifferentialExpression
Software › StatisticalMethod › FeatureExtraction
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › GenomeAnnotation
Software › BiologicalQuestion › GenomeAssembly
Software › ResearchField › Immunology › ImmunoOncology
Software › Technology › Sequencing › LongRead
Software › WorkflowStep › MultipleComparison
Software › WorkflowStep › Normalization
Software › Technology › Sequencing › RNASeq
Software › StatisticalMethod › Regression
Software › Technology › Sequencing
Software
Software › AssayDomain › Transcription
Software › ResearchField › Transcriptomics

Depended on by (2)

Bioconductor (2)

FLAMES NanoporeRNASeq

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