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GenomicAlignments

Bioc current

Representation and manipulation of short genomic alignments

v1.48.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.14 · Apr 14, 2014

Current · Requires R 4.6

1.0 In 25 of 49 releases 3.23

Description

Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Infrastructure
Software › Infrastructure › DataImport
Software › ResearchField › Genetics
Software › Technology › Sequencing
Software › Technology › Sequencing › RNASeq
Software › AssayDomain › SNP
Software › BiologicalQuestion › Coverage
Software › WorkflowStep › Alignment
Software › ResearchField › Immunology › ImmunoOncology

Depended on by (181)

Bioconductor (175)

AllelicImbalance amplican APAlyzer ASpli ATACseqQC ATACseqTFEA atena BaalChIP bambu Basic4Cseq BasicSTARRseq BindingSiteFinder BiocParallel biovizBase breakpointR CAGEfightR CAGEr cfDNAPro chimeraviz ChIPexoQual ChIPpeakAnno ChIPQC cigarillo CNEr CoverageView CrispRVariants crupR csaw CSSQ customProDB +145 more

CRAN (6)

PACVr VALERIE alakazam iimi futurize seqmagick

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