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RNAseqData.HNRNPC.bam.chr14

Bioc current

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

v0.50.0 · experiment · LGPL
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Release Lineage

Entered 2.13 · Oct 15, 2013

Current · Requires R 4.6

1.0 In 26 of 49 releases 3.23

Description

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Code

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Topics

ExperimentData
ExperimentData › SpecimenSource › Genome
ExperimentData › OrganismData › Homo_sapiens_Data
ExperimentData › TechnologyData › SequencingData
ExperimentData › RepositoryData › GEO
ExperimentData › RepositoryData › NCI
ExperimentData › TechnologyData › SequencingData › RNASeqData
ExperimentData › RepositoryData › ArrayExpress

Depended on by (10)

Bioconductor (10)

BiocParallel cigarillo GenomicAlignments GenomicFiles GenomicRanges roar Rsamtools SplicingGraphs sequencing samExploreR

People

Hervé Pagès