Bioconductor Packages

Example of 1D NMR spectra data for ASICS package

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Data and Files for the AssessORF Package

Illumina EPIC data on BeadSorted child saliva cells

R-side access to BioPlex protein-protein interaction data

Carbon Tetrachloride (CCl4) treated hepatocytes

Annotations for City of Hope CpG Island Analysis Pipeline

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Chimp and human brain data package

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Data package for DExMA package

Data Package for DMRcate

Drug versus Disease Data

Gene set collections for the EGSEA package

Data for the ELMER package

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

Human Functional Interactions (FIs) for splineTimeR package

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Illumina HumanMethylation data on sorted blood cell populations

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Illumina 450k data on sorted cord blood cells

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina HumanMethylation data on sorted cord blood cell populations

Illumina HumanMethylation data on sorted frontal cortex cell populations

Gene set collections for the GIGSEA package

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

Data employed in the vignette of the GSVA package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

Data for the Harman package

HiBED

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Long-read RNA-seq gene count data from human retinal organoids

Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes

Kinase PWMs based on data published by Johnson et al. 2023 and Yaron-Barir et al. 2024

LINCS Knock-Out Data Package

BS-seq data of H1 and IMR90 cell line excerpted from Lister et al. 2009

M3Drop Example Data

Example ChIP-Seq data for the MMDiff package

Example {M}ouse {U}niversal {G}enotyping {A}rray data for genome reconstruction and quantitative trait locus mapping.