Bioconductor Packages

Data and Files for the AssessORF Package

R-side access to BioPlex protein-protein interaction data

Hub package for the precomputed data of CENTRE and example data

ChIP-seq Target Databases for TFEA.ChIP

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Data Package for DMRcate

Example DNAm Data for DMRsegal

DNA Zoo data package

Orchestrating Blood Radiation Transcriptomic Data

Test Files for Single-Cell Droplet Utilities

Data, Clustering Results and Visualization Functions From Duò et al (2018)

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

Data for the EpiMix package

Download datasets from EMBL-EBI Expression Atlas

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Master regulators of FGFR2 signalling and breast cancer risk

GEO accession data GSE103322 as a SingleCellExperiment

GEO accession data GSE62944 as a SummarizedExperiment

Data employed in the vignette of the GSVA package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Provide programmatic access to the tonsil cell atlas datasets

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)

Data for the HelloRanges tutorial vignette

HiContacts companion data package

Collection of Bulk RNA-Seq Experiments With Many Replicates

R interface to EBI HoloFood resource

Long-read RNA-seq gene count data from human retinal organoids

Reproduce figures in IHW paper

Data package for JASPAR

Marker gene information for LRcell R Bioconductor package

LegATo: Longitudinal mEtaGenomic Analysis Toolkit

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

BS-seq data of H1 and IMR90 cell line excerpted from Lister et al. 2009

Reads from Two Lung Cancer Cell Lines

M3Drop Example Data

Test datasets for the MACSr package

Example data for MEDIPS and QSEA packages

R interface to EBI MGnify metagenomics resource

Example ChIP-Seq data for the MMDiff package

Collection of public MERFISH datasets

Transcriptomic Pancreatic Cancer Datasets

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Collection of Public DNA Methylation Sequencing Datasets

Datasets for benchmarking in microbiome research

Multi-omics data access for studies investigating the effects of aging