Skip to content

MicrobiomeBenchmarkData

Bioc current

Datasets for benchmarking in microbiome research

v1.14.0 · experiment · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.16 · Nov 2, 2022

Current · Requires R 4.6

1.0 In 8 of 49 releases 3.23

Description

The MicrobiomeBenchmarkData package provides functionality to access microbiome datasets suitable for benchmarking. These datasets have some biological truth, which allows to have expected results for comparison. The datasets come from various published sources and are provided as TreeSummarizedExperiment objects. Currently, only datasets suitable for benchmarking differential abundance methods are available.

Code & tests

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

ExperimentData
ExperimentData › TechnologyData › SequencingData › MicrobiomeData
ExperimentData › ReproducibleResearch
ExperimentData › TechnologyData › SequencingData

Depended on by (1)

Bioconductor (1)

bugphyzz

People