Bioconductor Packages

A data package

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

Example dataset for normalization of Illumina 450k Methylation data

Example of 1D NMR spectra data for ASICS package

Attribute-Weighted Aggregation Data

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Example of Amplified Data

Data and Files for the AssessORF Package

Analysing Illumina BeadArray expression data using Bioconductor

Illumina EPIC data on BeadSorted child saliva cells

Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)

R-side access to BioPlex protein-protein interaction data

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

Carbon Tetrachloride (CCl4) treated hepatocytes

Hub package for the precomputed data of CENTRE and example data

A Package for CLL Gene Expression Data

Methylation data of primary CLL samples in PACE project

Annotations for City of Hope CpG Island Analysis Pipeline

Data to support sexually dimorphic and COPD differential analysis for gene expression and methylation.

COSMIC.67

CRC cell line dataset

Datasets and workflows for the Cardinal MSI

Pre-processed data for use with the CellMapper package

Data Packages for ChAMP package

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

Chimp and human brain data package

Data for the CluMSID package

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

DNA methylation-based machine learning models

Data accompanying the DAPAR and Prostar packages

Data package for DExMA package

Diffuse large B-cell lymphoma expression data

Data Package for DMRcate

Example DNAm Data for DMRsegal

DNA Zoo data package

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Orchestrating Blood Radiation Transcriptomic Data

Supplementary data package for Dona et al. (2013) containing example images and tables

Test Files for Single-Cell Droplet Utilities

Drug versus Disease Data

Data, Clustering Results and Visualization Functions From Duò et al (2018)

Drug versus Disease Data

Gene set collections for the EGSEA package