amplican
Bioc currentAutomated analysis of CRISPR experiments
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
`amplican` performs alignment of the amplicon reads, normalizes gathered data, calculates multiple statistics (e.g. cut rates, frameshifts) and presents results in form of aggregated reports. Data and statistics can be broken down by experiments, barcodes, user defined groups, guides and amplicons allowing for quick identification of potential problems.
Code & tests
Open call graph →Line coverage
–
Expression
–
Tests / Examples
–
Functions
89 30 exported
Complexity
4 avg / 46 max
Call network
89 nodes / 116 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
12,512
Files
158
Compiled share
1.1%
Has compiled src
Yes
Language breakdown
API
Exported functions
53
Internal functions
51
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.30
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
50%
Unsafe pattern score
0
Dep constraint coverage
84%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
18
First release
2017-10-30
Latest release
2026-04-28
Avg cadence
185 days
Cold removal rate
100%
Dep drift
12
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Topics
People
- Eivind Valen cph maintainer
- Kornel Labun author