DESeq2

Bioc current

Differential gene expression analysis based on the negative binomial distribution

v1.52.0 · software · LGPL (>= 3)

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Release Lineage

Entered 2.12 · Apr 4, 2013

Current · Requires R 4.6

1.0 In 27 of 49 releases 3.23

Description

Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Technology › Sequencing

Software › Technology › Sequencing › RNASeq

Software › Technology › Sequencing › ChIPSeq

Software › AssayDomain › GeneExpression

Software › AssayDomain › Transcription

Software › WorkflowStep › Normalization

Software › BiologicalQuestion › DifferentialExpression

Software › StatisticalMethod › Bayesian

Software › StatisticalMethod › Regression

Software › StatisticalMethod › PrincipalComponent

Software › StatisticalMethod › Clustering

Software › ResearchField › Immunology › ImmunoOncology

Depended on by (255)

CRAN (41)

People

Michael Love author maintainer
CZI fnd
NIH NHGRI fnd
RADIANT EU FP7 fnd
Constantin Ahlmann-Eltze contributor
Simon Anders author contributor
Kwame Forbes contributor
Wolfgang Huber author contributor
Nikolaos Ignatiadis contributor
Raphael Rossellini contributor
Anqi Zhu contributor