Description
Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/conos>. The size of the 'conosPanel' package is approximately 12 MB.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 29, 2026
WARNING 8 OK · 3 NOTE · 3 WARNING · 0 ERROR · 0 FAILURE Apr 23, 2026
namespace references in data files
Data files with namespace references not in the recursive strong package dependencies: data/small_panel.preprocessed.rda: pagoda2 See section 'Data in packages' in the 'Writing R Extensions' manual.
namespace references in data files
Data files with namespace references not in the recursive strong package dependencies: data/small_panel.preprocessed.rda: pagoda2 See section 'Data in packages' in the 'Writing R Extensions' manual.
namespace references in data files
Data files with namespace references not in the recursive strong package dependencies: data/small_panel.preprocessed.rda: pagoda2 See section 'Data in packages' in the 'Writing R Extensions' manual.
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/conos.Rcheck/00install.out' for details.
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
NOTE 10 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
ERROR 9 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026
package dependencies
Packages required but not available: 'leidenAlg', 'sccore' Packages suggested but not available for checking: 'conosPanel', 'p2data', 'pagoda2', 'Seurat', 'uwot' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'org.Mm.eg.db', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'
package dependencies
Packages suggested but not available for checking: 'conosPanel', 'p2data'