|
CTCF
Bioc
|
Genomic coordinates of CTCF binding sites, with orientation
|
annotation |
0.99.14 |
|
DESeq2
Bioc
|
Differential gene expression analysis based on the negative
binomial distribution
|
software |
1.52.0 |
|
ExploreModelMatrix
Bioc
|
Graphical Exploration of Design Matrices
|
software |
1.24.0 |
|
GenomicFiles
Bioc
|
Distributed computing by file or by range
|
software |
1.48.0 |
|
airpart
Bioc
|
Differential cell-type-specific allelic imbalance
|
software |
1.20.0 |
|
apeglm
Bioc
|
Approximate posterior estimation for GLM coefficients
|
software |
1.34.0 |
|
biocmask
Bioc removed
|
Data masks for SummarizedExperiment enabling dplyr-like manipulation
|
|
0.99.19 |
|
denyranges
Bioc removed
|
Genomic coordinates of problematic genomic regions
|
|
0.99.1 |
|
easylift
Bioc
|
An R package to perform genomic liftover
|
software |
1.10.0 |
|
eds
Bioc
|
eds: Low-level reader for Alevin EDS format
|
software |
1.14.0 |
|
excluderanges
Bioc
|
Genomic coordinates of problematic genomic regions
|
annotation |
0.99.11 |
|
fishpond
Bioc
|
Fishpond: downstream methods and tools for expression data
|
software |
2.18.0 |
|
fluentGenomics
Bioc
|
A plyranges and tximeta workflow
|
workflows |
1.24.0 |
|
glmGamPoi
Bioc
|
Fit a Gamma-Poisson Generalized Linear Model
|
software |
1.24.0 |
|
nullranges
Bioc
|
Generation of null ranges via bootstrapping or covariate
matching
|
software |
1.18.0 |
|
nullrangesData
Bioc
|
ExperimentHub datasets for the nullranges package
|
experiment |
1.18.0 |
|
plyranges
Bioc
|
A fluent interface for manipulating GenomicRanges
|
software |
1.32.0 |
|
plyxp
Bioc
|
Data masks for SummarizedExperiment enabling dplyr-like
manipulation
|
software |
1.6.1 |
|
rigvf
Bioc
|
R interface to the IGVF Catalog
|
software |
1.4.0 |
|
rnaseqDTU
Bioc
|
RNA-seq workflow for differential transcript usage following
Salmon quantification
|
workflows |
1.32.0 |
|
rnaseqGene
Bioc
|
RNA-seq workflow: gene-level exploratory analysis and
differential expression
|
workflows |
1.36.0 |
|
spatialDmelxsim
Bioc
|
Spatial allelic expression counts for fly cross embryo
|
experiment |
1.18.0 |
|
splicelogic
Bioc
|
splicelogic: differential transcripts to splice events
|
software |
1.0.1 |
|
tidyomics
Bioc
|
Easily install and load the tidyomics ecosystem
|
software |
1.8.0 |
|
tximeta
Bioc
|
Transcript Quantification Import with Automatic Metadata
|
software |
1.30.0 |