Skip to content

fluentGenomics

Bioc current

A plyranges and tximeta workflow

v1.24.0 · workflows · MIT + file LICENSE
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.11 · Apr 28, 2020

Current · Requires R 4.6

1.0 In 13 of 49 releases 3.23

Description

An extended workflow using the plyranges and tximeta packages for fluent genomic data analysis. Use tximeta to correctly import RNA-seq transcript quantifications and summarize them to gene counts for downstream analysis. Use plyranges for clearly expressing operations over genomic coordinates and to combine results from differential expression and differential accessibility analyses.

Call graph

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

Workflow
Workflow › BasicWorkflow
Workflow › GeneExpressionWorkflow

People