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excluderanges

Bioc current

Genomic coordinates of problematic genomic regions

v0.99.11 · annotation · MIT + file LICENSE
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Release Lineage

Entered 3.15 · Apr 27, 2022

Current · Requires R 4.6

1.0 In 9 of 49 releases 3.23

Description

Genomic coordinates of problematic genomic regions that should be avoided when working with genomic data. GRanges of exclusion regions (formerly known as blacklisted), centromeres, telomeres, known heterochromatin regions, etc. (UCSC 'gap' table data). Primarily for human and mouse genomes, hg19/hg38 and mm9/mm10 genome assemblies.

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Topics

AnnotationData
AnnotationData › PackageType › AnnotationHub
AnnotationData › FunctionalAnnotation
AnnotationData › SequenceAnnotation › GenomicSequence

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