Bioconductor Packages

4,656 packages in the Bioconductor catalogue.

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AnnotationHub43

Current releases only – show all

Showing 1–42 of 42 packages

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Package	Category	Version	First Release	Last Release	Status
AHCytoBands Bioc CytoBands for AnnotationHub	annotation	0.99.1	3.15	3.23	current
AHLRBaseDbs Bioc LRBaseDbs for AnnotationHub	annotation	1.8.0	3.15	3.23	current
AHMeSHDbs Bioc MeSHDbs for AnnotationHub	annotation	1.8.0	3.15	3.23	current
AHPathbankDbs Bioc Metabolites and proteins linked to PathBank pathways (for AnnotationHub)	annotation	0.99.5	3.15	3.23	current
AHPubMedDbs Bioc SQLites, tibbles, and data.tables for AnnotationHub	annotation	1.8.0	3.15	3.23	current
AHWikipathwaysDbs Bioc Metabolites linked to WikiPathways pathways (for AnnotationHub)	annotation	0.99.4	3.15	3.23	current
AlphaMissense.v2023.hg19 Bioc AlphaMissense v2023 Pathogenicity Scores AnnotationHub Resource Metadata for hg19	annotation	3.18.2	3.18	3.23	current
AlphaMissense.v2023.hg38 Bioc AlphaMissense v2023 Pathogenicity Scores AnnotationHub Resource Metadata for hg38	annotation	3.18.2	3.18	3.23	current
CENTREannotation Bioc Hub package for the annotation data of CENTRE (GENCODE v40 and SCREEN v3)	annotation	0.99.1	3.22	3.23	current
CTCF Bioc Genomic coordinates of CTCF binding sites, with orientation	annotation	0.99.14	3.15	3.23	current
ENCODExplorerData Bioc A compilation of ENCODE metadata	annotation	0.99.5	3.15	3.23	current
EPICv2manifest Bioc Illumina Infinium MethylationEPIC v2.0 extended manifest from Peters et al. 2024	annotation	0.99.7	3.19	3.23	current
EpiTxDb.Hs.hg38 Bioc Annotation package for EpiTxDb objects	annotation	0.99.7	3.15	3.23	current
EpiTxDb.Mm.mm10 Bioc Annotation package for EpiTxDb objects	annotation	0.99.6	3.15	3.23	current
EpiTxDb.Sc.sacCer3 Bioc Annotation package for EpiTxDb objects	annotation	0.99.5	3.15	3.23	current
EuPathDB Bioc Provides access to pathogen annotation resources available on EuPathDB databases	annotation	1.0.1	3.15	3.23	current
GenomicState Bioc Build and access GenomicState objects for use with derfinder tools from sources like Gencode	annotation	0.99.17	3.15	3.23	current
HPO.db Bioc A set of annotation maps describing the entire Human Phenotype Ontology	annotation	0.99.2	3.18	3.23	current
JASPAR2022 Bioc Data package for JASPAR database (version 2022)	annotation	0.99.8	3.15	3.23	current
JASPAR2024 Bioc Data package for JASPAR database (version 2024)	annotation	0.99.7	3.18	3.23	current
MPO.db Bioc A set of annotation maps describing the Mouse Phenotype Ontology	annotation	0.99.8	3.18	3.23	current
TENET.AnnotationHub Bioc Annotation data for the TENET package	annotation	1.1.0	3.20	3.23	current
UCSCRepeatMasker Bioc UCSC RepeatMasker AnnotationHub resource metadata	annotation	3.22.0	3.15	3.23	current
alternativeSplicingEvents.hg19 Bioc Alternative splicing event annotation for Human (hg19)	annotation	1.1.0	3.15	3.23	current
alternativeSplicingEvents.hg38 Bioc Alternative splicing event annotation for Human (hg38)	annotation	1.1.0	3.15	3.23	current
cadd.v1.6.hg19 Bioc CADD v1.6 Pathogenicity Scores AnnotationHub Resource Metadata for hg19	annotation	3.18.1	3.18	3.23	current
cadd.v1.6.hg38 Bioc CADD v1.6 Pathogenicity Scores AnnotationHub Resource Metadata for hg38	annotation	3.18.1	3.18	3.23	current
excluderanges Bioc Genomic coordinates of problematic genomic regions	annotation	0.99.11	3.15	3.23	current
geneplast.data Bioc Input data for the geneplast package via AnnotationHub	annotation	0.99.9	3.15	3.23	current
gwascatData Bioc A text file in cloud with March 30 2021 snapshot of EBI/EMBL GWAS catalog	annotation	0.99.6	3.15	3.23	current
hpAnnot Bioc Anotation package for Hipathia package	annotation	1.1.3	3.15	3.23	current
metaboliteIDmapping Bioc Mapping of Metabolite IDs from Different Sources	annotation	1.0.0	3.15	3.23	current
ontoProcData Bioc A data package for ontoProc	annotation	0.99.9901	3.15	3.23	current
org.Hbacteriophora.eg.db Bioc Genome-wide Annotation for Heterorhabditis bacteriophora	annotation	0.99.1	3.22	3.23	current
org.Mxanthus.db Bioc Genome wide annotation for Myxococcus xanthus DK 1622	annotation	1.0.27	3.15	3.23	current
phastCons30way.UCSC.hg38 Bioc phastCons30way.UCSC.hg38 AnnotationHub Resource Metadata	annotation	3.13.1	3.15	3.23	current
phastCons35way.UCSC.mm39 Bioc UCSC phastCons mm39 conservation scores AnnotationHub Resource Metadata	annotation	3.16.0		3.23	current
phyloP35way.UCSC.mm39 Bioc UCSC phyloP mm39 conservation scores AnnotationHub Resource Metadata	annotation	3.16.0		3.23	current
rGenomeTracksData Bioc Demonstration Data from rGenomeTracks Package	annotation	0.99.0	3.15	3.23	current
scAnnotatR.models Bioc Pretrained models for scAnnotatR package	annotation	0.99.10	3.15	3.23	current
synaptome.data Bioc AnnotationData for Synaptome.DB package	annotation	0.99.6	3.15	3.23	current
synaptome.db Bioc Synamptosome Proteome Database	annotation	0.99.17	3.15	3.23	current