PACVr
Plastome Assembly Coverage Visualization
v1.1.5
·
Apr 17, 2026
·
BSD 3-clause License + file LICENSE
Description
Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Package required but not available: ‘GenomicAlignments’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 3, 2026
ERROR
r-release-linux-x86_64
package dependencies
Package required but not available: ‘GenomicAlignments’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 26, 2026
ERROR 10 OK · 0 NOTE · 3 WARNING · 1 ERROR · 0 FAILURE Mar 31, 2026
WARNING
r-devel-linux-x86_64-debian-clang
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
WARNING
r-devel-linux-x86_64-debian-gcc
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
WARNING
r-devel-windows-x86_64
dependencies in R code
Missing or unexported objects: 'Biostrings::compareStrings' 'Biostrings::nucleotideSubstitutionMatrix' 'Biostrings::pairwiseAlignment'
ERROR
r-oldrel-macos-x86_64
package dependencies
Package required but not available: ‘pwalign’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
WARNING 11 OK · 0 NOTE · 3 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
WARNING
r-devel-linux-x86_64-debian-gcc
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
WARNING
r-devel-linux-x86_64-fedora-clang
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
WARNING
r-devel-linux-x86_64-fedora-gcc
dependencies in R code
Missing or unexported objects: ‘Biostrings::compareStrings’ ‘Biostrings::nucleotideSubstitutionMatrix’ ‘Biostrings::pairwiseAlignment’
Dependency Network
Version History
new
1.0.11
Mar 10, 2026
new
0.8.1
Jul 25, 2019