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NanoporeRNASeq

Bioc current

Nanopore RNA-Seq Example data

v1.22.0 · experiment · GPL-3 + file LICENSE
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Release Lineage

Entered 3.12 · Oct 28, 2020

Current · Requires R 4.6

1.0 In 12 of 49 releases 3.23

Description

The NanoporeRNASeq package contains long read RNA-Seq data generated using Oxford Nanopore Sequencing. The data consists of 6 samples from two human cell lines (K562 and MCF7) that were generated by the SG-NEx project. Each of these cell lines has three replicates, with 1 direct RNA sequencing data and 2 cDNA sequencing data. Reads are aligned to chromosome 22 (Grch38) and stored as bam files. The original data is from the SG-NEx project.

Code

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Topics

ExperimentData › PackageTypeData › ExperimentHub
ExperimentData
ExperimentData › TechnologyData › SequencingData › RNASeqData
ExperimentData › SpecimenSource › Genome
ExperimentData › TechnologyData › SequencingData

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