appreci8R

Bioc current

appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV

v1.30.0 · software · LGPL-3

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Release Lineage

Entered 3.8 · Oct 31, 2018

Current · Requires R 4.6

1.0 In 16 of 49 releases 3.23

Description

The appreci8R is an R version of our appreci8-algorithm - A Pipeline for PREcise variant Calling Integrating 8 tools. Variant calling results of our standard appreci8-tools (GATK, Platypus, VarScan, FreeBayes, LoFreq, SNVer, samtools and VarDict), as well as up to 5 additional tools is combined, evaluated and filtered.

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Topics

Software › BiologicalQuestion › VariantDetection

Software › AssayDomain › GeneticVariability

Software › AssayDomain › SNP

Software › BiologicalQuestion › VariantAnnotation

Software › Technology › Sequencing

People

Sarah Sandmann