Bioconductor Packages

Simulation of Tumor Clonal Evolution with Realistic Sequencing Noise

Tools for counting and visualising mutations in a target location

Copy number calling and SNV classification using targeted short read sequencing

Computes estimates of the probability of related individuals sharing a rare variant

Mapping, quantification and variant analysis of sequencing data

Find SNV/Indel differences between two bam files with near relationship

appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity and high PPV

Extract Fragmentomics Features and Mutational Status

Infer Copy Number Variation from Single-Cell RNA-Seq Data

Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing

CNV detection tool for targeted NGS panel data

scQTLtools: an R/Bioconductor package for comprehensive identification and visualization of single-cell eQTLs

Retrotransposed transcript detection from structural variants