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VariantAnnotation

Bioc current

Annotation of Genetic Variants

v1.58.0 · software · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.9 · Nov 1, 2011

Current · Requires R 4.6

1.0 In 30 of 49 releases 3.23

Description

Annotate variants, compute amino acid coding changes, predict coding outcomes.

Code & tests

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Code

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Topics

Software › Infrastructure › DataImport
Software › Technology › Sequencing
Software › AssayDomain › SNP
Software › WorkflowStep › Annotation
Software › ResearchField › Genetics
Software › BiologicalQuestion › VariantAnnotation

Depended on by (136)

Bioconductor (129)

alabaster.files alabaster.vcf AllelicImbalance AnnotationHub APAlyzer appreci8R BadRegionFinder BBCAnalyzer BiocParallel biovizBase biscuiteer cardelino CCAFE cellbaseR ClonalSim CNVfilteR CNVrd2 CopyNumberPlots crisprDesign CrispRVariants customProDB DAMEfinder decompTumor2Sig deepSNV demuxSNP DominoEffect epialleleR fcScan fRagmentomics G4SNVHunter +99 more

CRAN (7)

PlasmaMutationDetector gpcp MoBPS SNPassoc ldsep polyRAD updog

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