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BadRegionFinder

Bioc current

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

v1.40.0 · software · LGPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

BadRegionFinder is a package for identifying regions with a bad, acceptable and good coverage in sequence alignment data available as bam files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.

Code

Code metrics have not been computed for this package yet.

Topics

Software › BiologicalQuestion › Coverage
Software › Technology › Sequencing
Software › WorkflowStep › Alignment
Software › Technology › Sequencing › WholeGenome
Software › StatisticalMethod › Classification

People

Sarah Sandmann