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CexoR

Bioc current

An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates

v1.50.0 · software · Artistic-2.0 | GPL-2 + file LICENSE
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Release Lineage

Entered 2.13 · Oct 15, 2013

Current · Requires R 4.6

1.0 In 26 of 49 releases 3.23

Description

Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function is used to detect significant normalised count differences of opposed sign at each DNA strand (peak-pairs). Then, irreproducible discovery rate for overlapping peak-pairs across biological replicates is computed.

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Topics

Software › ResearchField › FunctionalGenomics
Software › Technology › Sequencing
Software › BiologicalQuestion › Coverage
Software › Technology › Sequencing › ChIPSeq
Software › BiologicalQuestion › PeakDetection

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