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HiCExperiment

Bioc current

Bioconductor class for interacting with Hi-C files in R

v1.12.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.17 · Apr 26, 2023

Current · Requires R 4.6

1.0 In 7 of 49 releases 3.23

Description

R generic interface to Hi-C contact matrices in `.(m)cool`, `.hic` or HiC-Pro derived formats, as well as other Hi-C processed file formats. Contact matrices can be partially parsed using a random access method, allowing a memory-efficient representation of Hi-C data in R. The `HiCExperiment` class stores the Hi-C contacts parsed from local contact matrix files. `HiCExperiment` instances can be further investigated in R using the `HiContacts` analysis package.

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Topics

Software › Technology › Sequencing › HiC
Software › BiologicalQuestion › DNA3DStructure
Software › Infrastructure › DataImport

Depended on by (6)

Bioconductor (6)

HiContacts HiCool HiSpaR DNAZooData fourDNData OHCA

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