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mariner

Bioc current

Mariner: Explore the Hi-Cs

v1.12.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.17 · Apr 26, 2023

Current · Requires R 4.6

1.0 In 7 of 49 releases 3.23

Description

Tools for manipulating paired ranges and working with Hi-C data in R. Functionality includes manipulating/merging paired regions, generating paired ranges, extracting/aggregating interactions from `.hic` files, and visualizing the results. Designed for compatibility with plotgardener for visualization.

Code & tests

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Code

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Topics

Software › ResearchField › FunctionalGenomics
Software › WorkflowStep › Visualization
Software › Technology › Sequencing › HiC

Depended on by (1)

Bioconductor (1)

nullranges

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