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Coralysis

Bioc current

Coralysis sensitive identification of imbalanced cell types and states in single-cell data via multi-level integration

v1.2.0 · software · GPL-3
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Release Lineage

Entered 3.22 · Oct 30, 2025

Current · Requires R 4.6

1.0 In 2 of 49 releases 3.23

Description

Coralysis is an R package featuring a multi-level integration algorithm for sensitive integration, reference-mapping, and cell-state identification in single-cell data. The multi-level integration algorithm is inspired by the process of assembling a puzzle - where one begins by grouping pieces based on low-to high-level features, such as color and shading, before looking into shape and patterns. This approach progressively blends the batch effects and separates cell types across multiple rounds of divisive clustering.

Code

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Topics

Software › Technology › SingleCell
Software › Technology › Sequencing › RNASeq
Software › ResearchField › Proteomics
Software › ResearchField › Transcriptomics
Software › AssayDomain › GeneExpression
Software › WorkflowStep › BatchEffect
Software › StatisticalMethod › Clustering
Software › WorkflowStep › Annotation
Software › StatisticalMethod › Classification
Software › BiologicalQuestion › DifferentialExpression
Software › StatisticalMethod › DimensionReduction
Software

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