anansi
Bioc currentAnnotation-Based Analysis of Specific Interactions
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
Studies including both microbiome and metabolomics data are becoming more common. Often, it would be helpful to integrate both datasets in order to see if they corroborate each others patterns. All vs all association is imprecise and likely to yield spurious associations. This package takes a knowledge-based approach to constrain association search space, only considering metabolite-function pairs that have been recorded in a pathway database. This package also provides a framework to assess differential association.
Code
Structure
Lines of code
8,101
Files
85
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
25
Internal functions
97
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.10
testthat edition
3
CI present
Yes
CI type
["github-actions","travis"]
PR gated
Yes
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2025-10-29
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Topics
People
- Thomaz Bastiaanssen author maintainer
- Giulio Benedetti author
- Tuomas Borman author
- Leo Lahti author
- Thomas Quinn author