radEmu
Using Relative Abundance Data to Estimate of Multiplicative Differences in Mean Absolute Abundance
v2.3.2.0
·
Apr 2, 2026
·
MIT + file LICENSE
Description
A differential abundance method for the analysis of microbiome data. 'radEmu' estimates fold-differences in the abundance of taxa across samples relative to "typical" fold-differences. Notably, it does not require pseudocounts, nor choosing a denominator taxon. For more details, see Clausen et al. (2026) <doi:10.1093/biomet/asag009>.
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| r-devel-linux-x86_64-debian-gcc | OK |
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| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
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| r-release-macos-x86_64 | OK |
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NOTE 12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 3, 2026
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ERROR 6 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 27, 2026
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r-devel-linux-x86_64-fedora-gcc
tests
Running ‘testthat.R’ [11m/14m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(radEmu) Loading required package: MASS Loading required package: Matrix Loading required package: magrittr At ...[truncated]... sing numerical derivatives when gap, rho, u are zero ── Expected `macro_time[3] < 15` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 0 | SKIP 21 | PASS 237 ] Error: ! Test failures. Execution halted
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2.3.1.0
Mar 26, 2026