GSEABenchmarkeR

Description

The GSEABenchmarkeR package implements an extendable framework for reproducible evaluation of set- and network-based methods for enrichment analysis of gene expression data. This includes support for the efficient execution of these methods on comprehensive real data compendia (microarray and RNA-seq) using parallel computation on standard workstations and institutional computer grids. Methods can then be assessed with respect to runtime, statistical significance, and relevance of the results for the phenotypes investigated.

Code

Code metrics have not been computed for this package yet.

Topics

Depended on by (2)

People

• Ludwig Geistlinger author maintainer
• Gergely Csaba author
• Marcel Ramos contributor
• Mara Santarelli contributor
• Lucas Schiffer contributor
• Levi Waldron author
• Ralf Zimmer author